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Application of digital PCR and CRISPR/Cas13a-based fluorescent assay for accurate and on-site detection of cotton leafroll dwarf virus.

PubMed · 2026-04-01

Scientists developed two new methods to detect Cotton Leafroll Dwarf Virus more accurately and quickly than standard tests — one highly precise lab method and one fast, field-usable test that works without specialized equipment.

1

The digital PCR method enabled absolute viral load quantification and outperformed standard RT-PCR sensitivity, with Brownfield (F2) samples showing significantly higher virus titers than Lubbock samples.

2

The CRISPR/Cas13a fluorescent assay detected as few as 50 RNA copies of the virus, establishing a practical field-level limit of detection.

3

The CRISPR-based test worked directly on crude leaf extracts without RNA purification, making it deployable in field settings without laboratory infrastructure.

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