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A non-coding SNP in ELF3 alters ELF3β expression and confers adaptation of Arabidopsis to a continental climate.

PubMed · 2026-06-18

Researchers found that a single tiny genetic change in a key plant clock gene (ELF3) shifts how long Arabidopsis's internal daily rhythm runs, and that plants carrying this variant have thrived in hot, seasonally extreme climates — likely spreading as the last ice age receded from Europe.

1

A single non-coding DNA change in intron 2 of the ELF3 clock gene alters expression of a shorter protein variant (ELF3β), shifting the plant's circadian period length and enabling adaptation to continental climates with high seasonal temperature variability.

2

Circadian rhythms measured across 287 global Arabidopsis accessions via genome-wide association study identified multiple ELF3 variants defining three distinct haplogroups, each linked to different patterns of seasonal temperature.

3

Statistical signatures of a selective sweep in continental-climate haplogroups indicate this adaptation likely spread during Europe's most recent de-glaciation, demonstrating that natural selection has actively targeted a core circadian clock gene in response to climate.

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